Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015908670.1_cds_XP_016458838.1_52428
CDS Infomation

[gene=LOC107782467] [db_xref=GeneID:107782467] [protein=polygalacturonase At1g48100-like] [protein_id=XP_016458838.1] [location=join(11108..11491,11567..11734,11843..11887,11976..12183,12268..12349,12616..13123)] [gbkey=CDS]
Sequence

ATGGACTTTACTAAGATTTTATTCTTGATTTTTCATTTTATCTTGCTTTCCTTTGTTTGT
TCAGTTCATGGTAGGCTTTATGACTACCCGAACGTGCCCCGTTTTCGTGCATTGTCACAA
ATTTCATTGCCACCTTCCCCTGCACCTGAGGGTGCTCCAAACACTGACAATGGTAAGAAT
TCAAATGATTCTGCAGCCATTTTCAATGTGTTATCTTATGGTGCTGTTGGTGATGGTGTG
ACCGACGATACACAAGCGTTTAAAATGGCGTGGGATGCTGCTTGTCAAATTGATTCAGCC
ATTGTACTAGTTCCCTATCACTATTCTTTCATGATTCAATCCACAATCTTCACTGGTCCT
TGTAAAAGTGGACTAGTTTTTCAGATTGAAGGAACCATAATGCCACCAGATGGACCTGAT
TCATGGCCAAAAAGTGTCAGTAAAAGACAATGGTTAGTCTTTTACAGAATTGATGGAATG
TCAATGCAAGGTGGTGGACTTATAGATGGCAAAGGTGAAAAATGGTGGAATCTTCCTTGC
AAACCTCATAAGGGAATAAATGGAACAACTGCACCTGTTCCTTGTGACAGCCCAGTGGCT
TTAAGGTTTTTCATGAGCTCAAATTTGACAGTTCAAGGACTTAAAATCAAGAACAGTCCA
TTTTTCCATTTCAGATTTGACAGTTGCCATGATGTTCACATTGATTCACTATACATAAAA
TCACCATCTCTGAGCCCCAATACTGATGGAATTCACATAGAGAATACCAATGATGTCACT
ATACATAATTCAATAATCTACAATGGTGATGACTGTATTTCAATTGGAGCTGGTTGTTTC
AATGTTGATATAAGGAACATGACCTGTGGTCCTAGTCATGGAATAAGCATTGGCAGCCTA
GGCATTCGCAATTCGCGGGCATGTGTGTCGAACATTACAGTTTCAGATTCAACTATTAAG
CATTCAGACAATGGTGTTAGGATCAAGACATGGCAAGGTGGATTTGGGACAGTATCAAAG
GTTACTTTCAACAACATTAGAATGGAAAACGTCCGAAATCCGATAATTTTAGATCAATAT
TACTGCAACAACAACAACAAGAGCTGTGCAAATCAAACTTCAGCAGTGTACATTTCTGAT
GTGATTTATTCAAACATAAAGGGAACTTATGATGTGAGAAGTCCACCAATGCGTTTGGCT
TGTAGTGATAGTGTCCCTTGCACAAATTTGACTTTTGTAGATGTGGAGTTATATCCAGCT
CAAGGACAGAAAATTATAGAACCATATTGTTGGAATGCTTATGGAGATCTTAGGAGTCTT
ACTATTCCACCAGTTTTTTGCTTGTTGGAAGGCAAACCTCAGTCATTGCCAAGTAATGAT
GTTGATCAGTGTTGA

Peptide Sequence

PEP ID

XP_016458838.1
PEP Infomation

PREDICTED: polygalacturonase At1g48100-like [Nicotiana tabacum]
Sequence

MDFTKILFLIFHFILLSFVCSVHGRLYDYPNVPRFRALSQISLPPSPAPEGAPNTDNGKN
SNDSAAIFNVLSYGAVGDGVTDDTQAFKMAWDAACQIDSAIVLVPYHYSFMIQSTIFTGP
CKSGLVFQIEGTIMPPDGPDSWPKSVSKRQWLVFYRIDGMSMQGGGLIDGKGEKWWNLPC
KPHKGINGTTAPVPCDSPVALRFFMSSNLTVQGLKIKNSPFFHFRFDSCHDVHIDSLYIK
SPSLSPNTDGIHIENTNDVTIHNSIIYNGDDCISIGAGCFNVDIRNMTCGPSHGISIGSL
GIRNSRACVSNITVSDSTIKHSDNGVRIKTWQGGFGTVSKVTFNNIRMENVRNPIILDQY
YCNNNNKSCANQTSAVYISDVIYSNIKGTYDVRSPPMRLACSDSVPCTNLTFVDVELYPA
QGQKIIEPYCWNAYGDLRSLTIPPVFCLLEGKPQSLPSNDVDQC

Transcript Sequence

Gene sequence data has not been registered.